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Sixty years ago, the position of a gene on a chromosome was seen to be a major determinant of gene activity; however, position effects are rarely central to current discussions of gene expression. We describe a comprehensive and simplifying view of how position in 1D sequence and 3D nuclear space underlies expression. We suggest that apparently-different regulatory motifs including enhancers, silencers, insulators, barriers, and boundaries act similarly - they are active promoters that tether target genes close to, or distant from, appropriate transcription sites or 'factories'. We also suggest that any active transcription unit regulates the firing of its neighbors - and thus can be categorized as one or other type of motif; this is consistent with expression quantitative trait loci (eQTLs) being widely dispersed.

Original publication

DOI

10.1016/j.tig.2015.07.001

Type

Journal article

Journal

Trends Genet

Publication Date

09/2015

Volume

31

Pages

483 - 490

Keywords

boundary, domain, enhancer, expression quantitative trait loci, position effect, silencer, Animals, Base Sequence, DNA-Directed DNA Polymerase, Gene Expression Regulation, Gene Order, Genes, Genome, Humans, Regulatory Sequences, Nucleic Acid, Repressor Proteins