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UNLABELLED: The flexibility of α-helices is important for membrane protein function and calls for better visualization and analysis. Software is presented that quantifies and projects the helix axis evolution over time, with the choice of uniform or analytic heatmap graphics according to the local geometry. Bendix supports static, molecular dynamics, atomistic and coarse-grained input. AVAILABILITY AND IMPLEMENTATION: Bendix source code and documentation, including installation instructions, are freely available at http://sbcb.bioch.ox.ac.uk/Bendix. Bendix is written in Tcl as an extension to VMD and is supported by all major operating systems.

Original publication

DOI

10.1093/bioinformatics/bts357

Type

Journal article

Journal

Bioinformatics

Publication Date

15/08/2012

Volume

28

Pages

2193 - 2194

Keywords

Computational Biology, Membrane Proteins, Molecular Dynamics Simulation, Protein Structure, Secondary, Software, User-Computer Interface