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Interactions with lipids can dramatically shape and define the activity of membrane proteins. Here, we describe tools that allow the identification of these interactions using molecular dynamics simulation. Additionally, we provide the details of how to use different methods to probe the affinity of these interactions.

Original publication

DOI

10.1007/978-1-0716-1468-6_8

Type

Journal article

Journal

Methods Mol Biol

Publication Date

2021

Volume

2315

Pages

121 - 139

Keywords

Free energy calculations, Lipids, Membrane proteins, Molecular dynamics, Protein–lipid interactions, Biophysical Phenomena, Cell Membrane, Lipid Bilayers, Membrane Proteins, Molecular Dynamics Simulation, Protein Binding